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1

Bacterial cooperative organization under antibiotic stress

Eshel Ben-Jacob, Inon Cohen, Ido Golding, David L. Gutnick, Marianna Tcherpakov, Dirk Helbing, Ilan G. Ron

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2000

Language:

english

File:

PDF, 4.25 MB

english, 2000

2

Studies of bacterial branching growth using reaction–diffusion models for colonial development

Ido Golding, Yonathan Kozlovsky, Inon Cohen, Eshel Ben-Jacob

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1998

Language:

english

File:

PDF, 1.82 MB

english, 1998

3

Decision Making in Living Cells: Lessons from a Simple System

Journal:

Annual Review of Biophysics

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

4

Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

Skinner, Samuel O, Sepúlveda, Leonardo A, Xu, Heng, Golding, Ido

Journal:

Bioentrepreneur

Year:

2013

Language:

english

File:

PDF, 1019 KB

english, 2013

5

A quantitative study of the dynamics of adaptive mutation appearance

Ido Golding, Barbara Drossel, Yoash Shapira, Eshel Ben-Jacob

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2001

Language:

english

File:

PDF, 175 KB

english, 2001

6

Bursts of sectors in expanding bacterial colonies as a possible model for tumor growth and metastases

Ilan G. Ron, Ido Golding, Beatrice Lifsitz-Mercer, Eshel Ben-Jacob

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2003

Language:

english

File:

PDF, 763 KB

english, 2003

7

Autoimmunity as an immune defense against degenerative processes: a primary mathematical model illustrating the bright side of autoimmunity

Uri Nevo, Ido Golding, Avidan U. Neumann, Michal Schwartz, Solange Akselrod

Journal:

Journal of Theoretical Biology

Year:

2004

Language:

english

File:

PDF, 381 KB

english, 2004

8

General properties of transcriptional time series in Escherichia coli

So, Lok-hang, Ghosh, Anandamohan, Zong, Chenghang, Sepúlveda, Leonardo A, Segev, Ronen, Golding, Ido

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

9

High-resolution, long-term characterization of bacterial motility using optical tweezers

Min, Taejin L, Mears, Patrick J, Chubiz, Lon M, Rao, Christopher V, Golding, Ido, Chemla, Yann R

Journal:

Year:

2009

Language:

english

File:

PDF, 799 KB

english, 2009

10

Eukaryotic Transcription: What Does It Mean for a Gene to Be ‘on’?

Ido Golding, Edward C. Cox

Journal:

Current Biology

Year:

2006

Language:

english

File:

PDF, 106 KB

english, 2006

11

Physical Nature of Bacterial Cytoplasm

Golding, Ido, Cox, Edward

Journal:

Physical Review Letters

Year:

2006

Language:

english

File:

PDF, 171 KB

english, 2006

12

Real-Time Kinetics of Gene Activity in Individual Bacteria

Ido Golding, Johan Paulsson, Scott M. Zawilski, Edward C. Cox

Journal:

Year:

2005

Language:

english

File:

PDF, 542 KB

english, 2005

13

Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection

Lanying Zeng, Samuel O. Skinner, Chenghang Zong, Jean Sippy, Michael Feiss, Ido Golding

Journal:

Year:

2010

Language:

english

File:

PDF, 679 KB

english, 2010

14

Autoimmunity as a special case of immunity: removing threats from within

Uri Nevo, Jonathan Kipnis, Ido Golding, Iftach Shaked, Avidan Neumann, Solange Akselrod, Michal Schwartz

Journal:

Trends in Molecular Medicine

Year:

2003

Language:

english

File:

PDF, 292 KB

english, 2003

15

Quantitative Transcription Factor Binding Kinetics at the Single-Molecule Level

Wang, Yufang, Guo, Ling, Golding, Ido, Cox, Edward C., Ong, N.P.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 781 KB

english, 2009

16

Decision-Making in Bacteriophage Lambda: A View From the Single Phage

Zeng, Lanying, Skinner, Samuel O., Sippy, Jean, Feiss, Michael, Golding, Ido

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 31 KB

english, 2010

17

Single-Virus Tracking Reveals a Spatial Receptor-Dependent Search Mechanism

Rothenberg, Eli, Sepúlveda, Leonardo A., Skinner, Samuel O., Zeng, Lanying, Selvin, Paul R., Golding, Ido

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

18

Protein synthesis molecule by molecule

Ido Golding, Edward C Cox

Journal:

Year:

2006

Language:

english

File:

PDF, 61 KB

english, 2006

19

Watching Gene Regulation by Small RNA in Bacteria with Super-Resolution Imaging

Fei, Jingyi, Singh, Digvijay, Zhang, Qiucen, Park, Seongjin, Golding, Ido, Vanderpool, Carin K., Ha, Taekjip

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

20

Using Optical Traps to Study Bacterial Motility and Chemotaxis at the Single-Cell Level

Mears, Patrick J., Min, Taejin L., Golding, Ido, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 75 KB

english, 2012

21

Rapid Two-Photon Imaging with Nanometer Accuracy of Individual Quantum Dots in a Biological Environment

Zhang, Ruobing, Rothenberg, Eli, Fruhwirth, Gilbert, Golding, Ido, Ng, Tony, Lopes, Ward, Selvin, Paul R.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 41 KB

english, 2011

22

Gene Activity in Bacteria: Beyond First Approximations

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 81 KB

english, 2009

23

High Resolution, Long Term Characterization of Bacterial Motility Using Optical Tweezers

Min, Taejin L., Mears, Patrick J., Chubiz, Lon M., Rao, Christopher V., Golding, Ido, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 64 KB

english, 2010

24

A Quantitative Narrative for the Life Cycle of Bacteriophage Lambda

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

25

The Plasma Membrane Flattens Out to Fuel Cell-Surface Growth during Drosophila Cellularization

Figard, Lauren, Xu, Heng, Garcia, Hernan G., Golding, Ido, Sokac, Anna Marie

Journal:

Developmental Cell

Year:

2013

Language:

english

File:

PDF, 2.00 MB

english, 2013

26

The Energy Landscape of an Epigenetic System

Zong, Chenghang, Golding, Ido

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 73 KB

english, 2009

27

Two-Photon 3D FIONA of Individual Quantum Dots in an Aqueous Environment

Zhang, Ruobing, Rothenberg, Eli, Fruhwirth, Gilbert, Simonson, Paul D., Ye, Fangfu, Golding, Ido, Ng, Tony, Lopes, Ward, Selvin, Paul R.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.95 MB

english, 2011

28

Morphological characterization of in vitro neuronal networks

Shefi, Orit, Golding, Ido, Segev, Ronen, Ben-Jacob, Eshel, Ayali, Amir

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 393 KB

english, 2002

29

Two-dimensional polymers with random short-range interactions

Golding, Ido, Kantor, Yacov

Journal:

Physical Review E

Year:

1997

Language:

english

File:

PDF, 351 KB

english, 1997

30

Lubricating bacteria model for branching growth of bacterial colonies

Kozlovsky, Yonathan, Cohen, Inon, Golding, Ido, Ben-Jacob, Eshel

Journal:

Physical Review E

Year:

1999

Language:

english

File:

PDF, 1.27 MB

english, 1999

31

-prophage induction modeled as a cooperative failure mode of lytic repression

Chia, Nicholas, Golding, Ido, Goldenfeld, Nigel

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 108 KB

english, 2009

32

[Methods in Cell Biology] Biophysical Tools for Biologists, Volume Two: In Vivo Techniques Volume 89 || Chapter 8 Spatiotemporal Dynamics in Bacterial Cells: Real‐Time Studies with Single‐Event Resolution

Year:

2008

Language:

english

File:

PDF, 933 KB

english, 2008

33

Combining protein and mRNA quantification to decipher transcriptional regulation

Xu, Heng, Sepúlveda, Leonardo A, Figard, Lauren, Sokac, Anna Marie, Golding, Ido

Journal:

Year:

2015

Language:

english

File:

PDF, 1.62 MB

english, 2015

34

The Maternal-to-Zygotic Transition Targets Actin to Promote Robustness during Morphogenesis

Zheng, Liuliu, SepÃºlveda, Leonardo A., Lua, Rhonald C., Lichtarge, Olivier, Golding, Ido, Sokac, Anna Marie, Stern, David L.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.32 MB

english, 2013

35

Corrigendum: Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization

Skinner, Samuel O, Sepúlveda, Leonardo A, Xu, Heng, Golding, Ido

Journal:

Nature Protocols

Year:

2015

Language:

english

File:

PDF, 426 KB

english, 2015

36

Optical measurement of cycle-dependent cell growth

Mustafa Mir, Zhuo Wang, Zhen Shen, Michael Bednarz, Rashid Bashir, Ido Golding, Supriya G. Prasanth and Gabriel Popescu

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

37

DksA involvement in transcription fidelity buffers stochastic epigenetic change

Satory, Dominik, Gordon, Alasdair J. E., Wang, Mengyu, Halliday, Jennifer A., Golding, Ido, Herman, Christophe

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

38

SETD7 Controls Intestinal Regeneration and Tumorigenesis by Regulating Wnt/β-Catenin and Hippo/YAP Signaling

Oudhoff, Menno J., Braam, Mitchell J.S., Freeman, Spencer A., Wong, Denise, Rattray, David G., Wang, Jia, Antignano, Frann, Snyder, Kimberly, Refaeli, Ido, Hughes, Michael R., McNagny, Kelly M., Gold,

Journal:

Developmental Cell

Year:

2016

Language:

english

File:

PDF, 2.95 MB

english, 2016

39

Membrane Supply and Demand Regulates F-Actin in a Cell Surface Reservoir

Figard, Lauren, Wang, Mengyu, Zheng, Liuliu, Golding, Ido, Sokac, Anna Marie

Journal:

Developmental Cell

Year:

2016

Language:

english

File:

PDF, 3.30 MB

english, 2016

40

Single-Cell Studies of Phage λ: Hidden Treasures Under Occam's Rug

Journal:

Annual Review of Virology

Year:

2016

Language:

english

File:

PDF, 6.89 MB

english, 2016

41

Stochastic Kinetics of Nascent RNA

Xu, Heng, Skinner, Samuel O., Sokac, Anna Marie, Golding, Ido

Journal:

Physical Review Letters

Year:

2016

Language:

english

File:

PDF, 688 KB

english, 2016

42

Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene

Zong, Chenghang, So, Lok-hang, Sepúlveda, Leonardo A, Skinner, Samuel O, Golding, Ido

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 725 KB

english, 2010

43

Deciphering the Stochastic Kinetics of Gene Regulation

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 38 KB

english, 2017

44

The transcription fidelity factor GreA impedes DNA break repair

Sivaramakrishnan, Priya, Sepúlveda, Leonardo A., Halliday, Jennifer A., Liu, Jingjing, Núñez, María Angélica Bravo, Golding, Ido, Rosenberg, Susan M., Herman, Christophe

Journal:

Year:

2017

Language:

english

File:

PDF, 5.94 MB

english, 2017

45

Infection by bacteriophage lambda: an evolving paradigm for cellular individuality

Journal:

Current Opinion in Microbiology

Year:

2018

Language:

english

File:

PDF, 875 KB

english, 2018

46

Following Cell-fate in E. coli After Infection by Phage Lambda

Zeng, Lanying, Golding, Ido

Journal:

Journal of Visualized Experiments

Year:

2011

Language:

english

File:

PDF, 362 KB

english, 2011

47

Population Fitness and the Regulation of Escherichia coli Genes by Bacterial Viruses

Chen, Ying, Golding, Ido, Sawai, Satoshi, Guo, Ling, Cox, Edward C, Waldor, Matt

Journal:

Year:

2005

Language:

english

File:

PDF, 232 KB

english, 2005

48

Visualizing Escherichia coli Sub-Cellular Structure Using Sparse Deconvolution Spatial Light Interference Tomography

Mir, Mustafa, Babacan, S. Derin, Bednarz, Michael, Do, Minh N., Golding, Ido, Popescu, Gabriel, Heintzmann, Rainer

Journal:

Year:

2012

Language:

english

File:

PDF, 984 KB

english, 2012

49

Cofilin-Mediated Actin Stress Response Is Maladaptive in Heat-Stressed Embryos

Figard, Lauren, Zheng, Liuliu, Biel, Natalie, Xue, Zenghui, Seede, Hasan, Coleman, Seth, Golding, Ido, Sokac, Anna Marie

Journal:

Year:

2019

File:

PDF, 3.50 MB

2019

50

Measuring transcription at a single gene copy reveals hidden drivers of bacterial individuality

Wang, Mengyu, Zhang, Jing, Xu, Heng, Golding, Ido

Journal:

Nature Microbiology

Year:

2019

Language:

english

File:

PDF, 1.67 MB

english, 2019